The ship darted out from the box, flying chaotically in an attempt to outmaneuver the 'box' going around it. Failing that, the ship would self-destruct. Better to be taken with the ship than to reveal the Organization, after all...
The green-colored creature activated a sort of shield system, quite strong for only a human-class shield generator, to protect from the bullets and the EMP they created. His left arm then shifted into a machine gun, its face visibly grimacing in pain from the effort, and then aimed it at them and opened fire from afar. The black-colored one, with all of the shifting armor pieces, waited inside the shield as the bullets stormed them, then sent a trail of the nanites which made up its armor into the floor, eating at part of the flooring and creating more nanites as it did so with the materials, then when it was inside the floor, continued eating in the direction of the soldiers until there was a pool of nanites underneath their feet. And then...It ate the part of the floor they stood upon, causing them to fall about a inch or two(if that) into the thin pool of nanites, which then spread up and over them, demolishing their armor into base materials to make more nanites. Like a swarm of hungry ants, they'd devour the security personnel alive, and connect some of the guns to the black monster's armor, fusing the guns into one single one, and integrating it with the creature. It then would fire at the barriers, before realizing there was not effect on the barriers themselves, but would cause localized disruptions at nearby electronics. From there, it'd try to find a generator to attack in order to bring down the barriers, looking all around, and the green one-Feral-then finding a ventilation shaft and trying to use that to bypass the barrier(after all, if the ventilation shafts were also closed off, it'd present a safety hazard for any security personnel in the area, due to the potential for a lack of oxygen). The other-Berserk-followed his lead, knowing Feral was the one more likely to find something than she.